PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4U29927.10
Common NameJCGZ_14462, LOC105643357
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 137aa    MW: 15174.8 Da    PI: 11.3779
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4U29927.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.88.9e-212171256
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                   ++ GVr+++ +grWvAeI+d s   +r r +lg+++t+eeAa+a+++a+++l+ge
  Jcr4U29927.10 21 RFVGVRQRP-SGRWVAEIKDSS---QRVRLWLGTYDTPEEAARAYDEAARALRGE 71
                   689******.7*********43...36**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.2E-372184IPR001471AP2/ERF domain
PfamPF008478.8E-162171IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-292179IPR001471AP2/ERF domain
PROSITE profilePS5103220.5342178IPR001471AP2/ERF domain
CDDcd000181.55E-262175No hitNo description
PRINTSPR003679.3E-82233IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-212279IPR016177DNA-binding domain
PRINTSPR003679.3E-84460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
METLKNPSPT TKATKAISAR RFVGVRQRPS GRWVAEIKDS SQRVRLWLGT YDTPEEAARA  60
YDEAARALRG ENARTNFASS VNNNNNNNLN SNQSNGGFVS ESDGRHGLSF SSLKAKLSKN  120
LQNIMARTTE TKSTKNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-132084469ATERF1
3gcc_A1e-132084469ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012083844.14e-94PREDICTED: ethylene-responsive transcription factor ESR2-like
SwissprotQ6J9S12e-30RA211_ARATH; Ethylene-responsive transcription factor RAP2-11
TrEMBLA0A067JXK04e-94A0A067JXK0_JATCU; Uncharacterized protein
STRINGPOPTR_0014s07280.13e-62(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83243143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.18e-16related to AP2 11
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]